FILE 'CAPLUS, MEDLINE , BIOSIS, EMBASE ' ENTERED AT 13:02:57 ON 31 MAR 2004
T 1
LI
T A G A
iuyo
b J lANG . IN .
T O
L2
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b LI AND FUblON PROTEIN
L3
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DUP KhM Lz (b DUPLICATES REMOVED;
L4
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b EAPREbffffff bAME FUSION PROTEIN SAME REPOTER SAME LIBRARffffff
L5
35
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T 1
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b r UblON \ lUA; GREEN b LUUREbCENCE ( 1 0AJ LIBRARff fftt
L10
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b LIU AND EAFREbffffff
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b Lll AND LYCLOriEAlMlDE
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b Lll AND SCREENffffff
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S Lli AND ( INHIBITft fttt (10A) DEGRADATft ffff)
TIC
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0
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b Lli AND INHlBliffffff
Lib
DUP REM LI J (1 DUPL1L.A1L REMOVED;
L17
223458
S LI. IN.
L18
153
S LI 7 AND CYCLOHEXIMIDE
L19
0
S L18 AND FLUORESCENT PROTEIN
L20
0
S LI 8 AND FUSION PROTEIN
L21
37
S L17 AND FLUORESCENT PROTEIN
L22
0
S L21 AND LIBRAR###
L23
1
S L21 AND SCREEN###
FILE 'CAPLUS' ENTERED AT 13:02:57 ON 31 MAR 2004
USE IS SUBJECT TO THE TERMS OF YOUR STN CUSTOMER AGREEMENT.
PLEASE SEE "HELP USAGETERMS " FOR DETAILS.
COPYRIGHT (C) 2 004 AMERICAN CHEMICAL SOCIETY (ACS)
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FILE 'EMBASE 1 ENTERED AT 13:02:57 ON 31 MAR 2004
COPYRIGHT (C) 2 004 Elsevier Inc. All rights reserved.
=> s Jiang. in.
LI 1090 JIANG. IN.
=> s 11 and fusion protein
L2 8 LI AND FUSION PROTEIN
=> dup rem 112
L12 IS NOT VALID HERE
The L-number entered has not been defined in this session, or it
has been deleted. To see the L-numbers currently defined in this
session, enter DISPLAY HISTORY at an arrow prompt ( = >) .
=> dup rem 12
PROCESSING COMPLETED FOR L2
L3 2 DUP REM L2 (6 DUPLICATES REMOVED)
=> d 13 1-2 bib ab kwic
L3 ANSWER 1 OF 2 CAPLUS COPYRIGHT 2 004 ACS on STN DUPLICATE 1
AN 1999:320171 CAPLUS
DN 131:100245
TI Expression of a truncated receptor protein tyrosine phosphatase kappa in
the brain of an adult transgenic mouse
AU Shen, P.; Canoll, P. D.; Sap, J.; Musacchio, J. M.
CS Department of Pharmacology, New York University Medical Center, New York,
NY, 10016, USA
SO Brain Research (1999), 826(2), 157-171
CODEN: BRREAP; ISSN: 0006-8993
PB Elsevier Science B.V.
DT Journal
LA English
AB Receptor protein tyrosine phosphatases (RPTPs) comprise a family of
proteins that feature intracellular phosphatase domains and an ectodomain
with putative ligand-binding motifs'. Several RPTPs are expressed in the
brain, including RPTP-K which participates in homophilic cell-cell
interactions in vitro (Jiang, Y.-P et al . , 1993; Sap, J. et al . ,
1994). The homol. of RPTP-k's ectodomain to neural cell adhesion
mols. indicates potential roles in developmental processes such as axonal
growth and target recognition, as has been demonstrated for certain
Drosophila RPTPs. The brain distribution of RPTP-K-expressing cells
has not been determined, however. In a gene-trap mouse model with a P-gal
+ neo (1-geo) insertion in the endogenous RPTP-k gene, the
consequent loss of RPTP-k's enzymic activity does not produce any
obvious phenotypic defects (Skarnes, W. C. et al . , 1995). Nevertheless,
since the transgene • s expression is driven by the endogenous RPTP-k
promoter, distribution of the truncated RPTP-K/p-geo
fusion protein should reflect the regional and cellular
expression of wild-type RPTP-k, and thus may identify sites where
RPTP-k is important. Towards that goal, the authors have used this
mouse model to map the distribution of the truncated RPTP-K/p-
geo fusion protein in the adult mouse brain using
p-galactosidase as a marker enzyme. Visualization of the
p-galactosidase activity revealed a non-random pattern of expression,
and identified cells throughout the CNS that display RPTP-k promoter
activity. Several neural systems highly expressed the transgene-most
notably cortical, olfactory, hippocampal, hypothalamic, amygdaloid and
visual structures. These well -characterized brain regions may provide a
basis for future studies of RPTP-k function.
RE.CNT 4 0 THERE ARE 4 0 CITED REFERENCES AVAILABLE FOR THIS RECORD
ALL CITATIONS AVAILABLE IN THE RE FORMAT
AB Receptor protein tyrosine phosphatases (RPTPs) comprise a family of
proteins that feature intracellular phosphatase domains and an ectodomain
with putative ligand-binding motifs. Several RPTPs are expressed in the
brain, including RPTP-K which participates in homophilic cell-cell
interactions in vitro (Jiang, Y.-P et al . , 1993; Sap, J. et al . ,
1994). The homol . of RPTP-k' s ectodomain to neural cell adhesion
mols. indicates potential roles in developmental processes such as axonal
growth and target recognition, as has been demonstrated for certain
Drosophila RPTPs. The brain distribution of RPTP-K-expressing cells
has not been determined, however. In a gene -trap mouse model with a p-gal
+ neo (1-geo) insertion in the endogenous RPTP-k gene, the
consequent loss of RPTP-k's enzymic activity does not produce any
obvious phenotypic defects (Skarnes, W. C. et al . , 1995). Nevertheless,
since the transgene ' s expression is driven by the endogenous RPTP-k
promoter, distribution of the truncated RPTP-K/p-geo
fusion protein should reflect the regional and cellular
expression of wild-type RPTP-k, and thus may identify sites where
RPTP-k is important. Towards that goal, the authors have used this
mouse model to map the distribution of the truncated RPTP-k/P-
geo fusion protein in the adult mouse brain using
p-galactosidase as a marker enzyme. Visualization of the
p-galactosidase activity revealed a non-random pattern of expression,
and identified cells throughout the CNS that display RPTP-k promoter
activity. Several neural systems highly expressed the transgene-most
notably cortical, olfactory, hippocampal, hypothalamic, amygdaloid and
visual structures. These well-characterized brain regions may provide a
basis for future studies of RPTP-k function.
ANSWER 2 OF 2 CAPLUS COPYRIGHT 2 004 ACS on STN DUPLICATE 2
1997:698880 CAPLUS
128 :31575
Cloning and expression of a gene encoding a protein obtained from
earthworm secretion that is a chemoattractant for garter snakes
Liu, Weimin; Wang, Dalton; Chen, Ping; Halpern, Mimi
Department of Biochemistry, SUNY Health Science Center at Brooklyn, NY,
11203, USA
Journal of Biological Chemistry (1997), 272(43), 27378-27381
CODEN: JBCHA3; ISSN: 0021-9258
American Society for Biochemistry and Molecular Biology
Journal
English
The protein ES20, derived from earthworm shock secretion, is a
vomeronasally mediated chemoattractant for garter snakes (Jiang,
X. C, Inouchi, J., Wang, D., and Halpern, M. (1990) J. Biol. Chemical 265,
8736-8744) . Based on its 15-residue N-terminal amino acid sequence,
degenerative oligodeoxynucleotide probes were synthesized and used to
screen a cDNA library that was constructed in sense orientation using a
Uni-ZAP XR vector and XLl-Blue MRF 1 host. A gene was cloned from a
polymerase chain reaction as well as from the cDNA library. A combination
of the forward degenerative primer and T7 primer was used to obtain
gene-specific DNA fragments, from which probes were synthesized and
successfully used in screening the cDNA library. The ES2 0 gene is about
700 base pairs long and encodes 208 amino residues. The ES20 gene was
excised from a recombinant plasmid pSK-ES20, ligated to pQE30 expression
vector, and transformed into Escherichia coli strain JM109. The selected
L3
AN
DN
TI
AU
CS
SO
PB
DT
LA
AB
recombinant plasmids were transformed into expression host cell, E. coli
M15 [pREP4] . Three transf ormants were selected, induced with
isopropyl-l-thio-p-D-galactopyranoside for fusion gene expression and
an expressed 20-kDa fusion protein purified under
denaturing conditions. This protein was refolded and gave a pos . reaction
against ES20-specif ic polyclonal antibodies. The fusion
protein that had not been denatured remained as an aggregate and
was an active chemoattractant for garter snakes.
RE.CNT 19 THERE ARE 19 CITED REFERENCES AVAILABLE FOR THIS RECORD
ALL CITATIONS AVAILABLE IN THE RE FORMAT
AB The protein ES2 0, derived from earthworm shock secretion, is a
vomeronasally mediated chemoattractant for garter snakes (Jiang,
X. C, Inouchi, J. , Wang, D., and Halpern, M. (1990) J. Biol. Chemical 265,
8736-8744) . Based on its 15-residue N-terminal amino acid sequence,
degenerative oligodeoxynucleotide probes were synthesized and used to
screen a cDNA library that was constructed in sense orientation using a
Uni-ZAP XR vector and XLl-Blue MRF 1 host. A gene was cloned from a
polymerase chain reaction as well as from the cDNA library. A combination
of the forward degenerative primer and T7 primer was used to obtain
gene-specific DNA fragments, from which probes were synthesized and
successfully used in screening the cDNA library. The ES20 gene is about
700 base pairs long and encodes 2 08 amino residues. The ES2 0 gene was
excised from a recombinant plasmid pSK-ES20, ligated to pQE30 expression
vector, and transformed into Escherichia coli strain JM109. The selected
recombinant plasmids were transformed into expression host cell, E. coli
M15 [pREP4] . Three transf ormants were selected, induced with
isopropyl-l-thio-p-D-galactopyranoside for fusion gene expression and
an expressed 20-kDa fusion protein purified under
denaturing conditions. This protein was refolded and gave a pos. reaction
against ES20-specif ic polyclonal antibodies. The fusion
protein that had not been denatured remained as an aggregate and
was an active chemoattractant for garter snakes.
=> s expres### same fusion protein same repoter same librar###
L4 0 EXPRES### SAME FUSION PROTEIN SAME REPOTER SAME LIBRAR###
=> s expres### (10a) fusion protein (10a) reporter#
L5 35 EXPRES###(10A) FUSION PROTEIN (10A) REPORTER#
=> s 15 and librar###
L6 4 L5 AND LIBRAR###
=> s 16 and cycloheximide
L7 0 L6 AND CYCLOHEXIMIDE
=> dup rem 16
PROCESSING COMPLETED FOR L6
L8 4 DUP REM L6 (0 DUPLICATES REMOVED)
=> d 18 1-4 bib ab kwic
L8 ANSWER 1 OF 4 CAPLUS COPYRIGHT 2 004 ACS on STN
AN 2003:656310 CAPLUS
DN 139:174827
TI Methods and kits for isolating and characterizing short-lived proteins and
arrays derived therefrom for use in drug screening
IN Li, Xianqiang; Jiang, Xin
PA USA
SO U.S. Pat. Appl. Publ., 30 pp., Cont . -in-part of U.S. Ser. No. 53,230.
CODEN: USXXCO
DT Patent
LA English
FAN.CNT 3
PATENT NO. KIND DATE APPLICATION NO. DATE
PI
US
2003157540
Al
20030821
US
2003
-347160
20030116
US
2003134287
Al
20030717
US
2002
-53230
20020116
US
2003134288
Al
20030717
US
2002
-53516
20020116
PRAI
US
2002-53230
A2
20020116
us
2002-53516
A2
20020116
AB Compns . , kits and methods are provided for isolating and characterizing
short-lived proteins. The method comprises taking a library of
cells wherein each cell in the library expresses a
fusion protein comprising a reporter protein
and a protein encoded by a sequence from a cDNA library derived
from a sample of cells.. The sequence from the cDNA library is
varied within the cell library and the rate of protein
expression or degradation by cells in the library is modified. A
population of cells is selected from the library of cells based
on the population of cells having different reporter signal intensities
than other cells in the library wherein the difference between
intensities is indicative of the population of cells expressing shorter
lived fusion proteins than the fusion proteins expressed by the other
cells in the library and determining protein sequences of the fusion
proteins of the selected population of cells. Also provided are
oligonucleotide, protein and antibody arrays derived from short-lived
proteins. The arrays can be used for efficiently profiling expression of
short-lived proteins, screening for binding agents and comparing
expression levels under different conditions.
AB Compns., kits and methods are provided for isolating and characterizing
short-lived proteins. The method comprises taking a library of
cells wherein each cell in the library expresses a
fusion protein comprising a reporter protein
and a protein encoded by a sequence from a cDNA library derived
from a sample of cells.. The sequence from the cDNA library is
varied within the cell library and the rate of protein
expression or degradation by cells in the library is modified. A
population of cells is selected from the library of cells based
on the population of cells having different reporter signal intensities
than other cells in the library wherein the difference between
intensities is indicative of the population of cells expressing shorter
lived fusion proteins than the fusion proteins expressed by the other
cells in the library and determining protein sequences of the fusion
proteins of the selected population of cells. Also provided are
oligonucleotide, protein and antibody arrays derived from short-lived
proteins. The arrays can be used for efficiently profiling expression of
short-lived proteins, screening for binding agents and comparing
expression levels under different conditions.
IT Animal cell
(library; methods and kits for isolating and characterizing
short-lived proteins and arrays derived therefrom for use in drug
screening)
IT cDNA library
(proteins encoded by; methods and kits for isolating and characterizing
short-lived proteins and arrays derived therefrom for use in drug
screening)
L8 ANSWER 2 OF 4 CAPLUS COPYRIGHT 2 004 ACS on STN
AN 2002:353656 CAPLUS
DN 136:351377
TI Screening genes encoding nuclear transport proteins by GFP fusion protein
expression and cell sorting
IN Maekawa, Takami; Mori, Maiko; Takahara, Yoshiyuki
PA Aj inomoto Co . , Inc . , Japan
SO PCT Int. Appl., 60 pp.
CODEN: PIXXD2
DT Patent
LA Japanese
FAN.CNT 1
PATENT NO.
KIND DATE
APPLICATION NO. DATE
PI WO 2002036823 Al 20020510 WO 2001-JP9700 20011106
W: AE, AG, AL, AM, AT, AU, AZ , BA, BB, BG, BR, BY, BZ, CA, CH, CN,
CO, CR, CU, CZ, DE, DK, DM, DZ, EC, EE, ES , PI, GB, GD, GE, GH,
GM, HR, HU, ID, IL, IN, IS, JP, KE, KG, KP, KR, KZ, LC, LK, LR,
LS, LT, LU, LV, MA, MD, MG, MK, MN, MW, MX, MZ, NO, NZ, OM, PH,
PL, PT, RO, RU, SD, SE, SG, SI, SK, SL, TJ, TM, TR, TT, TZ, UA,
UG, US, UZ, VN, YU, ZA, ZW, AM, AZ, BY, KG, KZ, MD, RU, TJ, TM
RW: GH, GM, KE, LS, MW, MZ , SD, SL, SZ, TZ , UG, ZW, AT, BE, CH, CY,
DE, DK, ES, FI, FR, GB, GR, IE, IT, LU, MC, NL, PT, SE, TR, BF,
BJ, CF, CG, CI, CM, GA, GN, GQ, GW, ML, MR, NE, SN, TD, TG
AU 2002011021 A5 20020515 AU 2002-11021 20011106
EP 1333099 Al 20030806 EP 2001-979034 20011106
R: AT, BE, CH, DE, DK, ES, FR, GB, GR, IT, LI, LU, NL, SE, MC , PT,
IE, SI, LT, LV, FI, RO, MK, CY, AL, TR
US 2003180801 Al 20030925 US 2002-204310 20020821
PRAI JP 2000-337906 A 20001106
WO 2001-JP9700 W 20011106
AB A method for screening a gene encoding a protein specifically transporting
into nucleus by cloning each gene in a group of a large number of genes into
an expression vector to express as fusion
protein with a marker or reporter protein to construct a
gene expression library, introducing this gene expression
library into two cell groups to express the fusion proteins,
stimulating one of the cell groups, separating cells wherein the fusion
proteins are localized in the nucleus of such cells from both cell groups,
and comparing the separated cells or nuclei to thereby search for a gene
encoding a protein specifically transporting into the nucleus upon
stimulus, is disclosed. A nuclear localization signal is used in fusion
protein. Cell sorting, flow cytometry, microdissection, or microscopy
observation, is used to sort cells. 11 ESTs and 6 unknown genes coding
for proteins transporting into nucleus were identified by expressing as
GFP fusion proteins in HepG2 cells and stimulating with TNFa . Eight
unknown genes were also identified by heat shock stimulation.
RE.CNT 1 THERE ARE 1 CITED REFERENCES AVAILABLE FOR THIS RECORD
ALL CITATIONS AVAILABLE IN THE RE FORMAT
AB A method for screening a gene encoding a protein specifically transporting
into nucleus by cloning each gene in a group of a large number of genes into
an expression vector to express as fusion
protein with a marker or reporter protein to construct a
gene expression library, introducing this gene expression
library into two cell groups to express the fusion proteins,
stimulating one of the cell groups, separating cells wherein the fusion
proteins are localized in the nucleus of such cells from both cell groups,
and comparing the separated cells or nuclei to thereby search for a gene
encoding a protein specifically transporting into the nucleus upon
stimulus, is disclosed. A nuclear localization signal is used in fusion
protein. Cell sorting, flow cytometry, microdissection, or microscopy
observation, is used to sort cells. 11 ESTs and 6 unknown genes coding
for proteins transporting into nucleus were identified by expressing as
GFP fusion proteins in HepG2 cells and stimulating with TNFa. Eight
unknown genes were also identified by heat shock stimulation.
IT Nucleic acid library
(gene expression; screening genes encoding nuclear transport proteins
by GFP fusion protein expression and cell sorting)
L8 ANSWER 3 OF 4 CAPLUS COPYRIGHT 2 004 ACS on STN
AN 1997:740333 CAPLUS
DN 128:10873
TI A three -hybrid reporter gene method for screening for proteins binding
defined ligands
IN Liu, Jun; Licitra, Edward J.
PA Massachusetts Institute of Technology, USA
SO PCT Int. Appl., 4 0 pp.
COD EN: PIXXD2
DT Patent
LA English
FAN.CNT 1
PATENT NO. KIND DATE APPLICATION NO. DATE
PI wo
9741255
W: CA,
JP
Al
iyy / hod
1 Q07A/1TC
iyy /U4^b
RW: AT,
BE,
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CA
2252886
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1 Q Q *7 1 1 C\d
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907750
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2 002 0918
R: AT,
BE,
CH, DE,
DK, ES,
FR,
GB, GR, IT, LI, LU,
NL, SE,
IE,
FI
US
5928868
A
19990727
US 1997-845674
19970425
JP
2000508923
T2
20000718
JP 1997-539036
19970425
DE
29724617
Ul
20020718
DE 1997-29724617
19970425
EP
1241265
A2
20020918
EP 2002-76267
19970425
EP
1241265
A3
20040218
R: AT,
BE,
CH, DE,
DK, ES,
FR,
GB, GR, IT, LI, LU,
NL, SE,
IE,
SI,
LT, LV,
FI, RO,
MK,
CY, AL
AT
224454
E
20021015
AT 1997-921370
19970425
ES
2183166
T3
20030316
ES 1997-921370
19970425
PRAI US
1996-17341P
P
19960426
EP
1997-921370
A3
19970425
WO
1997-US6912
W
19970425
NL, PT, SE
MC, PT,
MC, PT,
AB A method for identifying the binding partner for a define ligand using an
extension of the two-hybrid system is described. The method uses a fusion
protein of the LexA protein and a ligand binding protein to bind to a LexA
operator upstream of a reporter gene. This is bound to by a conjugate of
the natural ligand for the protein and the ligand of interest. Possible
binding partners for the ligand are identified by introduction of an
expression library in which the proteins are synthesized as
fusion products with a transcriptional activator. When the necessary
combination of LexA fusion protein, ligand, and transcriptional activator
fusion protein are brought together, the
reporter gene is expressed. The method is particularly
intended for the identification of natural binding partners for small
mols. A fusion product of LexA and the rat glucocorticoid receptor is
used in a reconstruction experiment with FK506-binding protein FKBP12 is used
to demonstrate using a conjugate of dexamethasone and FK506 as the hybrid
ligand .
AB A method for identifying the binding partner for a define ligand using an
extension of the two-hybrid system is described. The method uses a fusion
protein of the LexA protein and a ligand binding protein to bind to a LexA
operator upstream of a reporter gene. This is bound to by a conjugate of
the natural ligand for the protein and the ligand of interest. Possible
binding partners for the ligand are identified by introduction of an
expression library in which the proteins are synthesized as
fusion products with a transcriptional activator. When the necessary
combination of LexA fusion protein, ligand, and transcriptional activator
fusion protein are brought together, the
reporter gene is expressed. The method is particularly
intended for the identification of natural binding partners for small
mols. A fusion product of LexA and the rat glucocorticoid receptor is
used in a reconstruction experiment with FK506-binding protein FKBP12 is used
to demonstrate using a conjugate of dexamethasone and FK506 as the hybrid
ligand .
IT Combinatorial library
(nucleic acid, screening for ligand-binding proteins of; three-hybrid
reporter gene method for screening for proteins binding defined
ligands)
IT Nucleic acid library
(screening for ligand-binding proteins of; three-hybrid reporter gene
method for screening for proteins binding defined ligands)
L8 ANSWER 4 OF 4 MEDLINE on STN
AN 9714 0325 MEDLINE
DN PubMed ID: 8986806
TI A novel member of the RING finger family, KRIP-1, associates with the
KRAB-A transcriptional repressor domain of zinc finger proteins.
AU Kim S S; Chen Y M; 0 ' Leary E; Witzgall R; Vidal M; Bonventre J V
CS Renal Unit, Massachusetts General Hospital, Charlestown 02129, USA.
NC DK 38452 (NIDDK)
DK 39773 (NIDDK)
NS 10828 (NINDS)
SO Proceedings of the National Academy of Sciences of the United States of
America, (1996 Dec 24) 93 (26) 15299-304.
Journal code: 7505876. ISSN: 0027-8424.
CY United States
DT Journal; Article; (JOURNAL ARTICLE)
LA English
FS Priority Journals
OS GENBANK-U673 03
EM 199701
ED Entered STN: 19970219
Last Updated on STN: 19970219
Entered Medline: 19970128
AB The Kruppel-associated box A (KRAB-A) domain is an evolutionarily
conserved transcriptional repressor domain present in approximately
one-third of zinc finger proteins of the Cys2-His2 type. Using the yeast
two-hybrid system, we report the isolation of a cDNA encoding a novel
murine protein, KRAB-A interacting protein 1 (KRIP-1) that physically
interacts with the KRAB-A region. KRIP-1 is a member of the RBCC
subfamily of the RING finger, or Cys3HisCys4, family of zinc binding
proteins whose other members are known to play important roles in
differentiation, oncogenesis, and signal transduction. The KRIP-1 protein
has high homology to TIF1, a putative modulator of ligand- dependent
activation function of nuclear receptors. A 3.5-kb mRNA for KRIP-1 is
ubiquitously expressed among all adult mouse tissues studied. When a
GAL4 -KRIP-1 fusion protein is expressed in
COS cells with a chloramphenicol acetyltransf erase reporter
construct with five GAL 4 binding sites, there is dose-dependent repression
of transcription. Thus, KRIP-1 interacts with the KRAB-A region of C2H2
zinc finger proteins and may mediate or modulate KRAB-A transcriptional
repressor activity.
AB ... of nuclear receptors. A 3.5-kb mRNA for KRIP-1 is ubiquitously
expressed among all adult mouse tissues studied. When a GAL4 -KRIP-1
fusion protein is expressed in COS cells with
a chloramphenicol acetyltransf erase reporter construct with five
GAL4 binding sites, there is dose-dependent repression of transcription.
Thus, KRIP-1 interacts with the KRAB-A region of.
CT Check Tags : Support, Non-U. S. Gov't; Support, U.S. Gov't, P.H.S.
Amino Acid Sequence
Animals
Base Sequence
COS Cells
Conserved Sequence
Embryo
Gene Library
Kidney: ME, metabolism
Mice
Molecular Sequence Data
Nuclear Proteins: BI, biosynthesis
Nuclear Proteins: CH, chemistry
*Nuclear Proteins: ME, .
=> s fusion (10a) green fluorescence ( 10a) librar###
L9 0 FUSION (10A) GREEN FLUORESCENCE ( 1 OA) LIBRAR###
=> s fusion (10a) green (10a) protein (10a) librar###
L10 40 FUSION (10A) GREEN (10A) PROTEIN (10A) LIBRAR###
=> s 110 and expres###
Lll 15 L10 AND EXPRES###
=> s 111 and cycloheximide
L12 0 Lll AND CYCLOHEXIMIDE
=> 111 and screen###
Lll IS NOT A RECOGNIZED COMMAND
The previous command name entered was not recognized by the system.
For a list of commands available to you in the current file, enter
"HELP COMMANDS" at an arrow prompt (=>) .
=> s 111 and screen###
L13 10 Lll AND SCREEN###
=> s 113 and (inhibit### ( 10a) degradat###)
L14 0 L13 AND ( INHIBIT### ( 10A) DEGRADAT###)
=> s 113 and inhibit###
L15 0 L13 AND INHIBIT###
=> dup rem 113
PROCESSING COMPLETED FOR L13
LI 6 9 DUP REM LI 3 (1 DUPLICATE REMOVED)
=> d 116 1-9 bib ab kwic
L16
AN
DN
TI
IN
PA
SO
DT
LA
ANSWER 1 OF 9 CAPLUS COPYRIGHT 2 0 04 ACS on STN DUPLICATE 1
2003 : 296076 CAPLUS
138 :315791
Fusions of random peptide libraries in scaffold proteins such as green
fluorescent protein or p-lactamase
Anderson, David; Peelle, Beau Robert; Bogenberger, Jakob Maria
Rigel Pharmaceuticals, Inc., USA
U.S., 63 pp. , Cont .
CODEN; USXXAM
Patent
English
-in-part of U.S. 6,180,343.
FAN.CNT 4
PI
PATENT NO.
KIND
DATE
APPLICATION NO.
DATE
US
6548632
Bl
20030415
US
1999-415765
19991008
US
6180343
Bl
20010130
US
1998-169015
19981008
US
6548249
Bl
20030415
US
2000-626581
20000727
us
6562617
Bl
20030513
US
2000-626580
20000727
us
2001003650
Al
20010614
US
2000-749959
20001227
us
6596485
B2
20030722
us
2003143562
Al
20030731
US
2002-177725
20020620
us
2003224412
Al
20031204
US
2003-393449
20030318
us
1998-169015
A2
19981008
us
1999-415765
A3
19991008
us
2002-177725
A2
20020620
AB
particularly
The invention relates to the use of scaffold proteins,
green fluorescent protein (GFP) and p-lactamase
TEM-1, in fusion constructs with random and defined peptides and
peptide libraries. The fusions act to increase the cellular
expression levels, decrease the cellular catabolism, increase the
conformational stability relative to linear peptides, and increase the
steady state concns . of the random peptides and random peptide library
members expressed in cells for the purpose of detecting the
presence of the peptides and screening random peptide libraries.
N- terminal, C- terminal, dual N- and C- terminal, and one or more internal
fusions are all contemplated. Internal fusions in Renilla GFP may be made
in loops 1-5 (amino acid residues 130-135, 154-159, 172-175, 188-193, or
208-216) for optimal presentation of the peptide. Inclusion of multiple
highly flexible amino acid residues between GFP and the library allows
minimal conformational constraints on the GFP. Designed insertion sites
in loops 2-4 retain a high level of GFP fluorescence when the inserts are
flanked by multiple glycines in the tetrapeptide linkers. Novel fusions
utilizing self-binding peptides to create a conf ormationally stabilized
fusion domain are also contemplated.
RE.CNT 44 THERE ARE 44 CITED REFERENCES AVAILABLE FOR THIS RECORD
ALL CITATIONS AVAILABLE IN THE RE FORMAT
AB The invention relates to the use of scaffold proteins, particularly
green fluorescent protein (GFP) and p-lactamase
TEM-1, in fusion constructs with random and defined peptides and
peptide libraries. The fusions act to increase the cellular
expression levels, decrease the cellular catabolism, increase the ,
conformational stability relative to linear peptides, and increase the
steady state concns. of the random peptides and random peptide library
members expressed in cells for the purpose of detecting the
presence of the peptides and screening random peptide libraries.
N-terminal, C- terminal, dual N- and C-terminal, and one or more internal
fusions are all contemplated. Internal fusions in Renilla GFP may be made
in loops 1-5 (amino acid residues 130-135, 154-159, 172-175, 188-193, or
208-216) for optimal presentation of the peptide. Inclusion of multiple
highly flexible amino acid residues between GFP and the library allows
minimal conformational constraints on the GFP. Designed insertion sites
in loops 2-4 retain a high level of GFP fluorescence when the inserts are
flanked by multiple glycines in the tetrapeptide linkers. Novel fusions
utilizing self-binding peptides to create a conf ormationally stabilized
fusion domain are also contemplated.
ST scaffold protein fusion random peptide library; green
fluorescent protein fusion random peptide
library; lactamase fusion random peptide library
IT Animal cell line
(293, GFP fusions expressed in; fusions of random peptide
libraries in scaffold proteins such as green fluorescent protein or
p-lactamase)
IT Animal cell line
(JURKAT, GFP fusions expressed in; fusions of random peptide
libraries in scaffold proteins such as green fluorescent protein or
p-lactamase)
L16 ANSWER 2 OF 9 CAPLUS COPYRIGHT 2 004 ACS on STN
AN 2003:950623 CAPLUS
DN 140:13712
TI Structurally biased random peptide libraries based on different scaffolds
IN Anderson, David; Peelle, Beau Robert; Bogenberger, Jakob Maria
PA USA
SO U.S. Pat. Appl. Publ., 110 pp., Cont . -in-part of U.S. Ser. No. 177,725.
CODEN: USXXCO
DT Patent
LA English
FAN.CNT 4
PATENT NO. KIND DATE APPLICATION NO. DATE
PI US 2003224412 Al 20031204
US 6180343 Bl 20010130
US 2003-393449 20030318
US 1998-169015 19981008
US 6548632
US 2003143562
Bl
Al
20030415
20030731
US 1999-415765
US 2002-177725
19991008
20020620
PRAI US 1998-169015 A2 19981008
US 1999-415765 A2 19991008
US 2002-177725 A2 20020620
AB The invention relates to the use of scaffold proteins, particularly
green fluorescent protein (GFP) , in fusion
constructs with random and defined peptides and peptide libraries
, to increase the cellular expression levels, decrease the cellular
catabolism, increase the conformational stability relative to linear
peptides, and to increase the steady state concns . of the library peptides
and peptide library members expressed in cells for the purpose
of detecting the presence of the peptides and screening peptide
libraries. N- terminal, C-terminal, dual N- and C-terminal and one or more
internal fusions are all contemplated. Novel fusions utilizing
self-binding peptides to create a conf ormationally stabilized fusion
domain are also contemplated.
AB The invention relates to the use of scaffold proteins, particularly
green fluorescent protein (GFP) , in fusion
constructs with random and defined peptides and peptide libraries
, to increase the cellular expression levels, decrease the cellular
catabolism, increase the conformational stability relative to linear
peptides, and to increase the steady state concns. of the library peptides
and peptide library members expressed in cells for the purpose
of detecting the presence of the peptides and screening peptide
libraries. N- terminal, C-terminal, dual N- and C-terminal and one or more
internal fusions are all contemplated. Novel fusions utilizing
self-binding peptides to create a conformationally stabilized fusion
domain are also contemplated.
ST scaffold protein fusion random peptide library; green
fluorescent protein fusion random peptide
library; lactamase fusion random peptide library
L16 ANSWER 3 OF 9 CAPLUS COPYRIGHT 2 004 ACS on STN
AN 2003:590695 CAPLUS
DN 139:144918
TI Random peptide libraries in the context of a reporter protein scaffold for
use in analysis of peptide effects on protein structure and function
IN Anderson, David; Peelle, Beau Robert; Bogenberger, Jakob Maria
PA Rigel Pharmaceuticals, Inc., USA
SO U.S. Pat. Appl. Publ., 110 pp., Cont . -in-part of U. S. Ser. No. 415,765.
CODEN: USXXCO
DT Patent
LA English
FAN.CNT 4
PATENT NO.
KIND
DATE
APPLICATION NO.
DATE
PI
US
2003143562
Al
20030731
US 2002-177725
20020620
US
6180343
Bl
20010130
US 1998-169015
19981008
us
6548632
Bl
20030415
US 1999-415765
19991008
us
2003224412
Al
20031204
US 2003-393449
20030318
PRAI
us
1998-169015
A2
19981008
us
1999-415765
A2
19991008
us
2002-177725
A2
20020620
AB A method of using a reporter protein as a framework within which the
effects of random peptides from a library on protein structure and
function is described. A DNA library in which the gene for the reporter
protein has sequences encoding random peptides inserted at defined sites
is prepared and expressed in a suitable host. The library may be
biased, e.g. to increase the possibility of including a peptide promoting
an a-helical structure. The peptides may be at the N- terminal, the
C-terminal, or at internal sites. The library is screened for
members showing properties such as increases in cellular reporter
concentration,
increased stability from lower rates of cellular catabolism, increased
conformational stability relative to linear peptides, and increased steady
state concns . of the library peptides. A reporter protein may be replaced
by a protein essential for cell survival. Novel fusions utilizing
self-binding peptides to create a conf ormationally stabilized fusion
domain are also contemplated. Loops in green fluorescent were identified
as potential sites for the peptide library and test peptides. Tests with
two different insertions showed consistent effects on protein fluorescence
in Escherichia coli and mammalian cells.
AB A method of using a reporter protein as a framework within which the
effects of random peptides from a library on protein structure and
function is described. A DNA library in which the gene for the reporter
protein has sequences encoding random peptides inserted at defined sites
is prepared and expressed in a suitable host. The library may be
biased, e.g. to increase the possibility of including a peptide promoting
an a-helical structure. The peptides may be at the N- terminal, the
C-terminal, or at internal sites. The library is screened for
members showing properties such as increases in cellular reporter
concentration,
increased stability from lower rates of cellular catabolism, increased
conformational stability relative to linear peptides, and increased steady
state concns. of the library peptides. A reporter protein may be replaced
by a protein essential for cell survival. Novel fusions utilizing
self-binding peptides to create a conf ormationally stabilized fusion
domain are also contemplated. Loops in green fluorescent were identified
as potential sites for the peptide library and test peptides. Tests with
two different insertions showed consistent effects on protein fluorescence
in Escherichia coli and mammalian cells.
ST scaffold protein fusion random peptide library; green
fluorescent protein fusion random peptide
library; lactamase fusion random peptide library
IT Peptides, biological studies
RL: BSU (Biological study, unclassified) ; BIOL (Biological study)
(bioactive, screening for; random peptide libraries in
context of reporter protein scaffold for use in anal, of peptide
effects on protein structure and function)
L16 ANSWER 4 OF 9 BIOSIS COPYRIGHT 2 004 BIOLOGICAL ABSTRACTS INC. on STN
AN 2003:378382 BIOSIS
DN PREV2 003 0 03783 82
TI Green fluorescent protein fusions with random peptides.
AU Anderson, David [Inventor, Reprint Author] ; Bogenberger, Jakob Maria
[Inventor]
CS Menlo Park, CA, USA
ASSIGNEE: Rigel Pharmaceuticals, Inc.
PI US 6596485 July 22, 2003
SO Official Gazette of the United States Patent and Trademark Office Patents,
(July 22 2003) Vol. 1272, No. 4. http://www.uspto.gov/web/menu/patdata.htm
1. e-file..
ISSN: 0098-1133 (ISSN print) .
DT Patent
LA English
ED Entered STN: 13 Aug 2003
Last Updated on STN: 13 Aug 2 003
AB The invention relates to the use of fluorescent proteins, particularly
green fluorescent protein (GFP) , in fusion
constructs with random and defined peptides and peptide libraries
, to increase the cellular expression levels, decrease the cellular
catabolism, increase the conformational stability relative to linear
peptides, and to increase the steady state concentrations of the random
peptides and random peptide library members expressed in cells
for the purpose of detecting the presence of the peptides and
screening random peptide libraries. N- terminal, C-terminal, dual
N- and C-terminal and one or more internal fusions are all contemplated.
Novel fusions utilizing self -binding peptides to create a conf ormationally
stabilized fusion domain are also contemplated.
AB The invention relates to the use of fluorescent proteins, particularly
green fluorescent protein (GFP) , in fusion
constructs with random and defined peptides and peptide libraries
, to increase the cellular expression levels, decrease the cellular
catabolism, increase the conformational stability relative to linear
peptides, and to increase the steady state concentrations of the random
peptides and random peptide library members expressed in cells
for the purpose of detecting the presence of the peptides and
screening random peptide libraries. N- terminal, C-terminal, dual
N- and C-terminal and one or more internal fusions are all contemplated.
Novel fusions.
IT Methods & Equipment
random peptide library screening: laboratory techniques
L16 ANSWER 5 OF 9 BIOSIS COPYRIGHT 2 0 04 BIOLOGICAL ABSTRACTS INC. on STN
AN 2003:280434 BIOSIS
DN PREV2 003 0 02 8 0434
TI Fusions of scaffold proteins with random peptide libraries.
AU Anderson, David [Inventor, Reprint Author] ; Peelle, Beau Robert
[Inventor] ; Bogenberger, Jakob Maria [Inventor]
CS ASSIGNEE: Rigel Pharmaceuticals, Inc.
PI US 6562617 May 13, 2003
SO Official Gazette of the United States Patent and Trademark Office Patents,
(May 13 2003) Vol. 1270, No. 2. http://www.uspto.gov/web/menu/patdata.html
. e-file.
ISSN: 0098-1133 (ISSN print) .
DT Patent
LA English
ED Entered STN : 11 Jun 2 003
Last Updated on STN: 11 Jun 2 003
AB The invention relates to the use of scaffold proteins, particularly
green fluorescent protein (GFP) , in fusion
constructs with random and defined peptides and peptide libraries
, to increase the cellular expression levels, decrease the cellular
catabolism, increase the conformational stability relative to linear
peptides, and to increase the steady state concentrations of the random
peptides and random peptide library members expressed in cells
for the purpose of detecting the presence of the peptides and
screening random peptide libraries. N- terminal, C-terminal, dual
N- and C-terminal and one or more internal fusions are all contemplated.
Novel fusions utilizing self-binding peptides to create a conf ormationally
stabilized fusion domain are also contemplated.
AB The invention relates to the use of scaffold proteins, particularly
green fluorescent protein (GFP) , in fusion
constructs with random and defined peptides and peptide libraries
, to increase the cellular expression levels, decrease the cellular
catabolism, increase the conformational stability relative to linear
peptides, and to increase the steady state concentrations of the random
peptides and random peptide library members expressed in cells
for the purpose of detecting the presence of the peptides and
screening random peptide libraries. N-terminal, C-terminal, dual
N- and C-terminal and one or more internal fusions are all contemplated.
Novel fusions.
ANSWER 6 OF 9 BIOSIS COPYRIGHT 2 004 BIOLOGICAL ABSTRACTS INC. on STN
2003 :227250 BIOSIS
PREV200300227250
Fusions of scaffold proteins with random peptide libraries.
Anderson, David [Inventor, Reprint Author] ; Peelle, Beau Robert
[Inventor] ; Bogenberger, Jakob Maria [Inventor]
San Bruno, CA, USA
ASSIGNEE: Rigel Pharmaceuticals, Inc.
L16
AN
DN
TI
AU
CS
PI US 6548249 April 15, 2003
SO Official Gazette of the United States Patent and Trademark Office Patents,
(Apr 15 2003) Vol. 1269, No. 3. http://www.uspto.gov/web/menu/patdata.html
. e-file.
ISSN: 0098-1133 (ISSN print) .
DT Patent
LA English
ED Entered STN : 7 May 2 003
Last Updated on STN : 7 May 2003
AB The invention relates to the use of scaffold proteins, particularly
green fluorescent protein (GFP) , in fusion
constructs with random and defined peptides and peptide libraries
, to increase the cellular expression levels, decrease the cellular
catabolism, increase the conformational stability relative to linear
peptides, and to increase the steady state concentrations of the random
peptides and random peptide library members expressed in cells
for the purpose of detecting the presence of the peptides and
screening random peptide libraries. N-terminal, C-terminal, dual
N- and C-terminal and one or more internal fusions are all contemplated.
Novel fusions utilizing self-binding peptides to create a conf ormationally
stabilized fusion domain are also contemplated.
AB The invention relates to the use of scaffold proteins, particularly
green fluorescent protein (GFP) , in fusion
constructs with random and defined peptides and peptide libraries
, to increase the cellular expression levels, decrease the cellular
catabolism, increase the conformational stability relative to linear
peptides, and to increase the steady state concentrations of the random
peptides and random peptide library members expressed in cells
for the purpose of detecting the presence of the peptides and
screening random peptide libraries. N-terminal, C-terminal, dual
N- and C-terminal and one or more internal fusions are all contemplated.
Novel fusions.
IT Methods & Equipment
peptide detection: laboratory techniques; random peptide library
screening: laboratory techniques
L16 ANSWER 7 OF 9 CAPLUS COPYRIGHT 2004 ACS on STN
AN 2000:241464 CAPLUS
DN 132:261918
TI Fusions of scaffold proteins with random peptide libraries
IN Anderson, David; Bogenberger, Jakob Maria; Peelle, Beau Robert
PA Rigel Pharmaceuticals, Inc., USA
SO PCT Int. Appl., 89 pp.
CODEN: PIXXD2
DT Patent
LA English
FAN.CNT 4
PATENT NO. KIND DATE APPLICATION NO. DATE
PI
WO
2000020574
A2
20000413
WO 1999-US23715
19991008
wo
2000020574
A3
20000921
W:
AE,
AL,
AM,
AT,
AU,
AZ,
BA,
BB,
BG,
BR,
BY,
CA,
CH,
CN,
cu,
cz,
DE,
DK,
EE,
ES,
FI,
GB,
GD,
GE,
GH,
GM,
HR,
HU,
ID,
IL,
IN,
is,
JP,
KE,
KG,
KP,
KR,
KZ,
LC,
LK,
LR,
LS,
LT,
LU,
LV,
MD,
MG,
MK,
MN,
MW,
MX,
NO,
NZ,
PL,
PT,
RO,
RU,
SD,
SE,
SG,
SI,
SK,
SL,
TJ,
TM,
TR,
TT,
TZ,
UA,
UG,
UZ,
VN,
YU,
ZA,
ZW,
AM,
AZ,
BY,
KG,
KZ,
MD,
RU,
TJ,
TM
RW:
GH,
GM,
KE,
LS,
MW,
SD,
SL,
SZ,
TZ,
UG,
ZW,
AT,
BE,
CH,
CY,
DE,
DK,
ES,
FI,
FR,
GB,
GR,
IE,
IT,
LU,
MC,
NL,
PT,
SE,
BF,
BJ,
CF,
CG,
CI,
CM,
GA,
GN,
GW,
ML,
MR,
NE,
SN,
TD,
TG
US
6180343
Bl
20010130
US 1998-169015
19981008
CA
2345215
AA
20000413
CA 1999-2345215
19991008
EP
1119617
A2
20010801
EP 1999-957466
19991008
R:
AT,
BE,
CH,
DE,
DK,
ES,
FR,
GB,
GR,
IT,
LI,
LU,
NL,
SE,
MC,
PT,
IE, SI, LT, LV, FI, RO
JP 2002526108 T2 20020820 JP 2000-574670 19991008
AU 768126 B2 20031204 AU 2000-15164 19991008
US 2001003650 Al 20010614 US 2000-749959 20001227
US 6596485 B2 20030722
PRAI US 1998-169015 A 19981008
WO 1999-US23715 W 19991008
AB The invention relates to the use of scaffold proteins, particularly
green fluorescent protein (GFP) , in fusion
constructs with random and defined peptides and peptide libraries
, to increase the cellular expression levels, decrease the cellular
catabolism, increase the conformational stability relative to linear
peptides, and to increase the steady state concns . of the random peptides
and random peptide library members expressed in cells for the
purpose of detecting the presence of the peptides and screening
random peptide libraries. N- terminal, C- terminal, dual N- and C- terminal
and one or more internal fusions are all contemplated. Novel fusions
utilizing self -binding peptides to create a conf ormationally stabilized
fusion domain are also contemplated. Thus, expts. to identify sites which
may be used to insert peptides into GFP are described.
AB The invention relates to the use of scaffold proteins, particularly
green fluorescent protein (GFP) , in fusion
constructs with random and defined peptides and peptide libraries
, to increase the cellular expression levels, decrease the cellular
catabolism, increase the conformational stability relative to linear
peptides, and to increase the steady state concns. of the random peptides
and random peptide library members expressed in cells for the
purpose of detecting the presence of the peptides and screening
random peptide libraries. N-terminal, C-terminal, dual N- and C- terminal
and one or more internal fusions are all contemplated. Novel fusions
utilizing self-binding peptides to create a conf ormationally stabilized
fusion domain are also contemplated. Thus, expts. to identify sites which
may be used to insert peptides into GFP are described.
ST scaffold protein peptide fusion library; green fluorescent
protein peptide fusion library
LI 6 ANSWER 8 OF 9 CAPLUS COPYRIGHT 2 0 04 ACS on STN
AN 2000:114405 CAPLUS
DN 132:147593
TI Methods and compositions for peptide libraries displayed on light-emitting
scaffolds of proteins
IN Kamb, Carl Alexander; Abedi , Ma j id
PA Arcaris, Inc., USA
SO U.S., 24 pp., Cont. -in-part of U.S. 5,955,275.
CODEN: USXXAM
DT Patent
LA English
FAN.CNT 11
PATENT NO. KIND DATE APPLICATION NO. DATE
US
6025485
A
20000215
US
6623922
Bl
20030923
US
5955275
A
19990921
CA
2309543
AA
19990520
WO
9924617
Al
19990520
W:
AL,
AM,
AT, AU,
AZ,
BA,
BB,
DK,
EE,
ES, FI,
GB,
GD,
GE,
KG,
KP,
KR, KZ,
LC,
LK,
LR,
MX,
NO,
NZ, PL,
PT,
RO,
RU,
TT,
UA,
UG, US,
UZ,
VN,
YU,
RW:
GH,
GM,
KE, LS,
MW,
SD,
SZ,
FI,
FR,
GB, GR,
IE,
IT,
LU,
CM,
GA,
GN, GW,
ML,
MR,
NE,
AU
9915200
Al
19990531
US 1997-965477 19971106
US 1997-800664 19970214
US 1997-812994 19970304
CA 1998-2309543 19981106
WO 1998-US23778 19981106
BG,
BR,
BY,
CA,
CH,
CN,
CU,
CZ,
DE,
GH,
GM,
HR,
HU,
ID,
IL,
IS,
JP,
KE,
LS,
LT,
LU,
LV,
MD,
MG,
MK,
MN,
MW,
SD,
SE,
SG,
SI /
SK,
SL,
TJ,
TM,
TR,
ZW,
AM,
AZ,
BY,
KG,
KZ,
MD,
RU,
TJ,
UG,
ZW,
AT,
BE,
CH,
CY,
DE,
DK,
ES,
MC,
NL,
PT,
SE,
BF,
BJ,
CF,
CG,
CI,
SN,
TD,
TG
AU 1999-15200 19981106
EP 1029081 Al 20000823 EP 1998-959391 19981106
R: AT, BE, CH, DE, DK, ES, FR, GB, GR, IT, LI, LU, NL, SE, MC, PT,
IE, FI
Jp
o /\ /*k i r~ «™» i r - n
2 001522587
T2
2 001112 0
JP
2000 -
519609
T QQ01 1 A C
iy y oi iuo
us
6566057
Bl
2003 052 0
US
1999-
269006
iy y yuj l /
NO
2 000002375
A
2000063 0
NO
2000-
2375
zUUUUoUb
US
2 00213222 9
Al
2002 0919
US
2001-
929663
2. U U 10 o 14
US
2002090605
Al
2002 0711
US
2001-
935929
20010823
PRAI US
1997-800664
A2
19970214
US
1997-812994
A2
19970304
US
1996-699266
A2
19960819
WO
1997-US14514
A2
19970819
US
1997-965477
A
19971106
wo
1998-US23778
W
19981106
US
1999-259155
Bl
19990226
us
1999-378420
Bl
19990820
AB Methods and compns . for peptides or protein fragments displayed on
scaffolds and libraries of sequences encoding peptides or protein
fragments displayed on scaffolds that permit the properties of the library
to be easily and quant, monitored are disclosed. The scaffold is a
protein that is capable of emitting light. Thus, solvent -exposed loops
are identified in the Aequorea victoria green fluorescent protein (GFP)
which can accommodate and present random aptamers while allowing GFP to
retain its autof luorescent properties; these loops optimally comprise
amino acid residues Alal55 -Ilel61, Lysl62-Glnl83 , and Glnl84 -Ser205 . A
minibody (Ig) -GFP scaffold system is also described. The plasmid vector
pVT21, which permits induction of GFP expression in the presence of
galactose, was obtained by manipulation of pACA151, a 6.7-kb 2\jl yeast
shuttle vector containing a red-shifted (S65T) GFP expression cassette and the
phosphoglycerate kinase 3" end. Thus, anal, of the expression of
individual members of the library when they are expressed in
cells may be carried out using instruments that can analyze the emitted
light, such as flow sorter (FACS) , a spectrophotometer, a microtiter plate
reader, a CCD, a fluorescence microscope, or other similar device. This
permits screening of the expression library in host cells on a
cell -by-cell basis, and enrichment of the library for sequences that have
predetd . characteristics .
RE.CNT 7 THERE ARE 7 CITED REFERENCES AVAILABLE FOR THIS RECORD
ALL CITATIONS AVAILABLE IN THE RE FORMAT
AB Methods and compns. for peptides or protein fragments displayed on
scaffolds and libraries of sequences encoding peptides or protein
fragments displayed on scaffolds that permit the properties of the library
to be easily and quant, monitored are disclosed. The scaffold is a
protein that is capable of emitting light. Thus, solvent -exposed loops
are identified in the Aequorea victoria green fluorescent protein (GFP)
which can accommodate and present random aptamers while allowing GFP to
retain its autof luorescent properties; these loops optimally comprise
amino acid residues Alal55 -Ilel61, Lysl62 -Glnl83 , and Glnl84 -Ser205 . A
minibody (Ig) -GFP scaffold system is also described. The plasmid vector
pVT21, which permits induction of GFP expression in the presence of
galactose, was obtained by manipulation of pACA151, a 6.7-kb 2u yeast
shuttle vector containing a red-shifted (S65T) GFP expression cassette and the
phosphoglycerate kinase 3' end. Thus, anal, of the expression of
individual members of the library when they are expressed in
cells may be carried out using instruments that can analyze the emitted
light, such as flow sorter (FACS) , a spectrophotometer, a microtiter plate
reader, a CCD, a fluorescence microscope, or other similar device. This
permits screening of the expression library in host cells on a
cell -by-cell basis, and enrichment of the library for sequences that have
predetd. characteristics.
IT Immunoglobulins
RL: ARU (Analytical role, unclassified); BPN (Biosynthetic preparation);
BPR (Biological process) ,- BSU (Biological study, unclassified) ; ANST
(Analytical study) ; BIOL (Biological study) ; PREP (Preparation) ; PROC
(Process)
(fusion products, green fluorescent protein
fusion library; methods and compns . for peptide
libraries displayed on light -emitting scaffolds of proteins)
L16 ANSWER 9 OF 9 CAPLUS COPYRIGHT 2 004 ACS on STM
AN 1999:330461 CAPLUS
DN 130:333721
TI Methods and compositions for peptide libraries displayed on light-emitting
scaffolds of proteins
IN Kamb, Carl Alexander; Abedi, Majid
PA Ventana Genetics, Inc., USA
SO PCT Int. Appl., 56 pp.
CODEN: PIXXD2
DT Patent
LA English
FAN.CNT 11
PATENT NO.
KIND
DATE
APPLICATION NO.
DATE
PI WO
'9924617
Al
19990520
WO 1998-US23778
19981106
W: AL,
AM,
AT, AU,
AZ,
BA,
BB,
BG, BR,
BY,
CA, CH,
CN, CU,
CZ,
DE,
DK,
EE,
ES, FI,
GB,
GD,
GE,
GH, GM,
HR,
HU, ID,
IL, IS,
UP/
KE,
KG,
KP,
KR, KZ,
LC,
LK,
LR,
LS, LT,
LU,
LV, MD,
MG, MK,
MN,
MW,
MX,
NO,
NZ , PL ,
PT,
RO,
RU,
SD, SE,
SG,
SI, SK,
SL, TJ,
TM,
TR,
TT,
UA,
UG, US,
UZ,
VN,
YU,
ZW, AM,
AZ,
BY, KG,
KZ, MD,
RU,
TJ,
RW: GH,
GM,
KE, LS,
MW,
SD,
SZ,
UG, ZW,
AT,
BE, CH,
CY, DE,
DK,
ES,
FI,
FR,
GB, GR,
IE,
IT,
LU,
MC, NL,
PT,
SE, BF,
BJ, CF,
CG,
CI,
CM,
GA,
GN, GW,
ML,
MR,
NE,
SN, TD,
TG
US
6025485
A
20000215
US 1997-965477
19971106
CA
2309543
AA
19990520
CA 1998-2309543
19981106
AU
9915200
Al
19990531
AU 1999-15200
19981106
EP
1029081
Al
20000823
EP 1998-959391
19981106
R: AT,
BE,
CH, DE,
DK,
ES,
FR,
GB, GR,
IT,
LI, LU,
NL, SE,
MC,
PT,
IE,
FI
JP
2001522587
T2
20011120
JP 2000-519609
19981106
US
6566057
Bl
20030520
US 1999-269006
19990317
NO
2000002375
A
20000630
NO 2000-2375
20000505
PRAI US
1997-965477
A
19971106
US
1997-800664
A2
19970214
US
1997-812994
A2
19970304
WO
1998-US23778
W
19981106
TM
AB Methods and compns. for peptides or protein fragments displayed on
scaffolds and libraries of sequences encoding peptides or protein
fragments displayed on scaffolds that permit the properties of the library
to be easily and quant, monitored are disclosed. The scaffold is a
protein that is capable of emitting light. Thus, anal, of the expression
of individual members of the library when they are expressed in
cells may be carried out using instruments that can analyze the emitted
light, such as a flow sorter (FACS) , a spectrophotometer, a microtiter
plate reader, a CCD, a fluorescence microscope, or other similar device.
This permits screening of the expression library in host cells
on a cell -by-cell basis, and enrichment of the library for sequences that
have predetd. characteristics.
RE.CNT 4 THERE ARE 4 CITED REFERENCES AVAILABLE FOR THIS RECORD
ALL CITATIONS AVAILABLE IN THE RE FORMAT
AB Methods and compns. for peptides or protein fragments displayed on
scaffolds and libraries of sequences encoding peptides or protein
fragments displayed on scaffolds that permit the properties of the library
to be easily and quant, monitored are disclosed. The scaffold is a
protein that is capable of emitting light. Thus, anal, of the expression
of individual members of the library when they are expressed in
cells may be carried out using instruments that can analyze the emitted
light, such as a flow sorter (FACS) , a spectrophotometer, a microtiter
plate reader, a CCD, a fluorescence microscope, or other similar device.
This permits screening of the expression library in host cells
on a cell -by-cell basis, and enrichment of the library for sequences that
have predetd. characteristics.
ST peptide library fusion light emitting scaffold
green fluorescent protein
IT Immunoglobulins
RL: ARU (Analytical role, unclassified) ; BPN (Biosynthetic preparation) ;
BPR (Biological process) ; BSU (Biological study, unclassified) ; ANST
(Analytical study) ; BIOL (Biological study) ; PREP (Preparation) ; PROC
(Process)
(green fluorescent protein fusion
library; methods and compns . for peptide libraries
displayed on light-emitting scaffolds of proteins)